PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1597s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 210aa    MW: 23619 Da    PI: 8.4821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1597s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.9e-16797197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                         ffk+   s   +s ++ +p +f+ + + + ++ ++  l  + g++W+v +   ++++ +++t+GWk Fvk+n++  g f++F++ + ++f  
  Kalax.1597s0004.1.p  7 FFKIYF-S-DDSSEIMKMPEEFVGHLKADYKGCRQAYLVGPGGEEWRVGF--ARCGNDCFFTDGWKTFVKDNDVAYGHFLLFRYRRGMRF-- 92
                         566662.3.34445699******666666668889***************..*******************************9877888.. PP

                         EEEEE CS
                   B3 93 vvkvf 97
                         +v +f
  Kalax.1597s0004.1.p 93 KVNIF 97
                         88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.9295100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-205100IPR015300DNA-binding pseudobarrel domain
CDDcd100178.49E-16597No hitNo description
SuperFamilySSF1019362.35E-195100IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-117100IPR003340B3 DNA binding domain
PfamPF023621.2E-13797IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDLLPVFFKI YFSDDSSEIM KMPEEFVGHL KADYKGCRQA YLVGPGGEEW RVGFARCGND  60
CFFTDGWKTF VKDNDVAYGH FLLFRYRRGM RFKVNIFTPS GLESEAAFTA KCTQGWKNNG  120
AEKGQSSNNG GQVLPACCLV KPSADEGTSR RPGKRPKGES HMMSAAEQRV ADVFSSVHPF  180
IIRQMNFERS QTPVLVRLIF LDFATFLCF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.14e-13B3 family protein